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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18457885_18457969_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18457885 - 18457969
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
NERTETITAQIELDKTAEDF
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.9
35.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
35.4
-1.7
2.9
42.3
44.4
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052