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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18458099_18459692_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18458099 - 18459692
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCC
Flanking Amino Acid:
RDQQINHCALLITEIKQEMR
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73
0.52
1
69.7
36.7
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
65.5
0.47
1.5
74.31
36.6

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052