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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18461283_18464064_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18461283 - 18464064
Intron Length:
2782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTACTTAACA
Flanking Amino Acid:
MLKEEEKTVKEKETELNKLK
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.1
0.45
1
67.8
42.6
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
74.2
0.76
1.4
79.08
36.9

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052