About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18464260_18464962_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18464260 - 18464962
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTATTTTAACA
Flanking Amino Acid:
LKQQELMYNQDFYIQQVQRR
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.2
0.63
1
73.9
39.8
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
73.1
0.72
1.2
77.98
32

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052