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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18465128_18465621_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18465128 - 18465621
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
TACTTGCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATGAAAT
Flanking Amino Acid:
VLHAQHKKLQSDVQLIKRAM
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.1
0.32
1.1
59
40.8
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
49.6
0.05
2
75.74
39.6

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052