Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18468523_18469443_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18468523 - 18469443

Intron Length:

921

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTAAA

5'SS Class:

major

3'SS Sequence:

TTTGGGATCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAA

U12 Branch Point Sequence:

TCAGTGTCAACT

Flanking Amino Acid:

QNSFKEVTETSEEYEEKLKL

Intron Amino Acid Position:

773

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

78.7

29.9

Major BPS

57.9

0.2

1.4

63.4

44.3

Major PPT

69.4

0.44

61.6

43.4

Minor 5ss

42.8

-0.8

2.5

50.6

40.3

Minor BPS

45.4

-0.2

2.3

64.08

46.3

Associated Gene:

Gene:

CCDC39

Ensembl Gene ID:

ENSAPLG00000010760

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011221

18453443 - 18472494

19052