Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18470960_18471103_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18470960 - 18471103

Intron Length:

144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGTATG

5'SS Class:

major

3'SS Sequence:

TGTATGTTAAAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATGTTTTAAACT

Flanking Amino Acid:

KPKLERVLKQCSRLSREIQS

Intron Amino Acid Position:

856

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.3

74.4

41.9

Major BPS

100

1.24

0.5

100

Major PPT

59.8

0.22

1.2

60.4

Minor 5ss

40.8

-1

2.6

51.1

45.4

Minor BPS

62.4

0.47

1.6

77.17

Associated Gene:

Gene:

CCDC39

Ensembl Gene ID:

ENSAPLG00000010760

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011221

18453443 - 18472494

19052