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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18478565_18478870_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18478565 - 18478870
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTAAACT
Flanking Amino Acid:
KKQSAAWALKCVKAGVDYFK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.9
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
34.2
-1.8
2.9
39.6
40.9
Minor BPS
69.1
0.68
1.6
85.39
35.1

Associated Gene:

Gene:
TTC14
Ensembl Gene ID:
ENSAPLG00000010921
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011403
18473916 - 18482010
8095