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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18480678_18481258_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18480678 - 18481258
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
GGCTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
IRQIADLEITALCPLRDVPP
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.8
40.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76
0.59
0.9
69.1
37
Minor 5ss
42.6
-0.8
3.2
66.4
44.5
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
TTC14
Ensembl Gene ID:
ENSAPLG00000010921
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011403
18473916 - 18482010
8095