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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18481738_18481843_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18481738 - 18481843
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TCGTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
GCGCCCTCAGCG
Flanking Amino Acid:
RGGASRLQAVWGEVTGLEAD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
75.3
0.57
0.8
69.7
31.1
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
45.5
-0.4
1.9
46.1
46

Associated Gene:

Gene:
TTC14
Ensembl Gene ID:
ENSAPLG00000010921
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011403
18473916 - 18482010
8095