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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18524185_18531183_F

Intron Information:

Intron Rank:
125306
Intron Class:
major
Intron Phase:
Intron Coordinates:
18524185 - 18531183
Intron Length:
6999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
AATTGCATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
80.8
33.7
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
42.6
-0.8
3
57.9
46.3
Minor BPS
52.6
0.06
2
67.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017471
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034243
18523786 - 18533607
9822