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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18659720_18660817_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18659720 - 18660817
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTTTTGTTATCT
Flanking Amino Acid:
RVSDKSSLDLVDIQTQLEKW
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.6
0.78
0.8
81.5
35.9
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
53.7
0.19
2.3
78.81
43.9

Associated Gene:

Gene:
PEX5L
Ensembl Gene ID:
ENSAPLG00000011193
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011650
18643390 - 18680809
37420