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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18660945_18662086_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18660945 - 18662086
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
ACATTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AATACATTATTT
Flanking Amino Acid:
SSRAPSKELLWSTENRSQSE
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
70.8
39.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
71.7
0.49
0.9
63
42.5
Minor 5ss
37.8
-1.4
3.4
54.5
44.7
Minor BPS
50
0.08
1.9
69.99
40.6

Associated Gene:

Gene:
PEX5L
Ensembl Gene ID:
ENSAPLG00000011193
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011650
18643390 - 18680809
37420