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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18662184_18667924_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18662184 - 18667924
Intron Length:
5741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TATTCTTTTATT
Flanking Amino Acid:
SELELAPAIQARSAKEQRWG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
70.3
0.72
1.5
84.68
36.4

Associated Gene:

Gene:
PEX5L
Ensembl Gene ID:
ENSAPLG00000011193
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011650
18643390 - 18680809
37420