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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18668021_18674877_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18668021 - 18674877
Intron Length:
6857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
EFERAKAAVESDTEFWDKMQ
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
PEX5L
Ensembl Gene ID:
ENSAPLG00000011193
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011650
18643390 - 18680809
37420