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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18678376_18679172_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18678376 - 18679172
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
TRRMSKTSEESSLLEEVKDL
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
68.7
0.42
0.9
61.3
35
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
PEX5L
Ensembl Gene ID:
ENSAPLG00000011193
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011650
18643390 - 18680809
37420