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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18693132_18693791_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18693132 - 18693791
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATTT
Flanking Amino Acid:
HYVCHLKKEGRWVIYNDLRV
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
50.3
0.09
1.8
70.99
41.1

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146
ENSAPLT00000025940
18691121 - 18728397
37277