Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18693877_18695512_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18693877 - 18695512

Intron Length:

1636

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

TATTTGTTAAAC

Flanking Amino Acid:

EGPRIKDGPGRYELFGFISH

Intron Amino Acid Position:

798

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

27.2

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

71.1

0.48

1.1

66.9

42.6

Minor 5ss

44.5

-0.6

2.8

38.4

Minor BPS

57.4

0.21

2.1

72.44

38.3

Associated Gene:

Gene:

USP13

Ensembl Gene ID:

ENSAPLG00000011239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017575

18691121 - 18728397

37277

ENSAPLT00000011758

18692252 - 18728397

36146

ENSAPLT00000025940

18691121 - 18728397

37277