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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18695676_18696160_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18695676 - 18696160
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
GATTGACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTTGTTTGATT
Flanking Amino Acid:
NLAIQALKATNNNLERALEW
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
34.4
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
66.9
0.38
1
58.2
42
Minor 5ss
38.2
-1.3
2.8
50.7
39.7
Minor BPS
67.2
0.62
1.7
86.34
34.1

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146
ENSAPLT00000025940
18691121 - 18728397
37277