Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18696328_18697269_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18696328 - 18697269

Intron Length:

942

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTATTGTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

AATTGATCAATG

Flanking Amino Acid:

NWIIAHMEEPDFAEPLVVPA

Intron Amino Acid Position:

688

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

1.1

78.8

30.1

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

84.9

0.78

0.9

41.9

Minor 5ss

28.4

-2.5

2.9

32.1

42.4

Minor BPS

44.6

-0.5

2.1

52.69

41.9

Associated Gene:

Gene:

USP13

Ensembl Gene ID:

ENSAPLG00000011239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017575

18691121 - 18728397

37277

ENSAPLT00000011758

18692252 - 18728397

36146

ENSAPLT00000025940

18691121 - 18728397

37277