Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18697414_18699032_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18697414 - 18699032

Intron Length:

1619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTACGTATC

5'SS Class:

major

3'SS Sequence:

TCCTTTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

ATATTCTAGACG

Flanking Amino Acid:

KDRTMNHFMDSLDIDESSVM

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.1

71.1

38.9

Major BPS

73.5

0.58

79.3

29.4

Major PPT

88.4

0.86

0.7

83.9

24.2

Minor 5ss

41.8

-0.9

3.1

38.8

Minor BPS

54.1

-0

1.8

60.84

41.2

Associated Gene:

Gene:

USP13

Ensembl Gene ID:

ENSAPLG00000011239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025940

18691121 - 18728397

37277

ENSAPLT00000011758

18692252 - 18728397

36146