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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18699662_18699916_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18699662 - 18699916
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATATACTTAACC
Flanking Amino Acid:
FGLDWIPKKLDVSVDMPDFL
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
35.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.5
0.78
0.7
80.6
31.5
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
74.6
0.75
1.4
79.3
35

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146
ENSAPLT00000025940
18691121 - 18728397
37277