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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18700006_18702019_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18700006 - 18702019
Intron Length:
2014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
CTTCACTGAATT
Flanking Amino Acid:
SALQAKSAGVKTSRFASFPE
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
77.6
0.62
0.9
69.3
41.7
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
57.7
0.32
1.7
75.59
40.9

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011758
18692252 - 18728397
36146
ENSAPLT00000025940
18691121 - 18728397
37277
ENSAPLT00000017575
18691121 - 18728397
37277