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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1870055_1879578_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1870055 - 1879578
Intron Length:
9524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTTGTCTCCATA
Flanking Amino Acid:
FGSLMSATDPVTVLAIFHEL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
76.1
0.59
0.9
69.7
35.8
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
48.2
-0.1
2
66.51
40.8

Associated Gene:

Gene:
SLC9A9
Ensembl Gene ID:
ENSAPLG00000000606
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001069
1821682 - 2036835
215154