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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18708218_18708479_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18708218 - 18708479
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCTTCCCTACAG
Flanking Amino Acid:
LDPTQDFNTQMAKLGHGLLS
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
48.7
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025940
18691121 - 18728397
37277
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146