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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18708552_18709910_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18708552 - 18709910
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTGCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
IIFSIPEFQRAYVGNLPRIY
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.4
67.1
44.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
74.4
0.55
0.9
72.6
37.5
Minor 5ss
37
-1.5
2.7
41.4
38.2
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025940
18691121 - 18728397
37277
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146