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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18710846_18715187_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18710846 - 18715187
Intron Length:
4342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAC
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTGATACAATA
Flanking Amino Acid:
KLGTITPDGADVYSFDEEEP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
63.2
43.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
33.6
-1.9
3
41.9
44.9
Minor BPS
44.7
-0.4
2
61.29
39.1

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146
ENSAPLT00000025940
18691121 - 18728397
37277