About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18715373_18715602_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18715373 - 18715602
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTTCTGTCATT
Flanking Amino Acid:
QLDNGVRIPPSGWKCSKCDL
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
49.6
0.05
2.3
77.48
40

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025940
18691121 - 18728397
37277
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146