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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18715746_18716187_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18715746 - 18716187
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
CTTTGCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTGAGATTGATC
Flanking Amino Acid:
LPNIEELPALVTIACDALLS
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
65
41.1
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
82.7
0.74
0.8
73.4
37.1
Minor 5ss
27.6
-2.6
2.9
28.9
37.2
Minor BPS
46
-0.3
2
59.21
40.4

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025940
18691121 - 18728397
37277
ENSAPLT00000017575
18691121 - 18728397
37277
ENSAPLT00000011758
18692252 - 18728397
36146