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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18726925_18728298_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18726925 - 18728298
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ACTGATGGAGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CTCCTTGTGACT
Flanking Amino Acid:
YLHLKRHVREQRGLASVFEG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
49.7
-0
1.1
44
41.5
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
46.1
-0.2
2
63.02
42.1

Associated Gene:

Gene:
USP13
Ensembl Gene ID:
ENSAPLG00000011239
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011758
18692252 - 18728397
36146