About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18733736_18734045_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18733736 - 18734045
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
PMPSPERLEKVQKSMKNIDL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.3
0.77
0.7
77.7
35.7
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
MRPL47
Ensembl Gene ID:
ENSAPLG00000011793
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035516
18728391 - 18735684
7294
ENSAPLT00000012278
18728184 - 18736245
8062