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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18743769_18744076_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18743769 - 18744076
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGTCGC
5'SS Class:
major
3'SS Sequence:
CTGACTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTACTTTAATG
Flanking Amino Acid:
LQVSDSTYDEQVAAQMPTVH
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.1
52.3
45
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
68
0.4
1
57.9
43
Minor 5ss
35.7
-1.6
3.2
49.5
40.8
Minor BPS
69.1
0.46
1.4
68.78
39

Associated Gene:

Gene:
ACTL6A
Ensembl Gene ID:
ENSAPLG00000011809
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012348
18740956 - 18748080
7125