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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18744405_18744483_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18744405 - 18744483
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTACAATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TATTCCCTACAA
Flanking Amino Acid:
IIPPYMIASKEAVREGSPAN
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66.4
45.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
67
0.38
0.9
62.5
37.3
Minor 5ss
31.5
-2.1
3.1
39.9
45.7
Minor BPS
52.5
0.08
2
70.98
40.5

Associated Gene:

Gene:
ACTL6A
Ensembl Gene ID:
ENSAPLG00000011809
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012348
18740956 - 18748080
7125