About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18745723_18746946_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18745723 - 18746946
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTGTTTACAT
Flanking Amino Acid:
LHPVLMSEAPWNTRAKREKL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.4
32.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
31.8
-2.1
2.7
38.8
40.3
Minor BPS
49.3
0.03
2.1
72.3
45

Associated Gene:

Gene:
ACTL6A
Ensembl Gene ID:
ENSAPLG00000011809
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012348
18740956 - 18748080
7125