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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18747048_18747643_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18747048 - 18747643
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGGTGC
5'SS Class:
weak_major
3'SS Sequence:
AATGTCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTTACTTCAATG
Flanking Amino Acid:
EAISPLKNGMIEDWDSFQAI
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.1
51.2
41
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
71.4
0.48
1
62.9
42.2
Minor 5ss
44.4
-0.6
3.1
54.4
44.4
Minor BPS
54.6
0.01
1.7
59.96
42.5

Associated Gene:

Gene:
ACTL6A
Ensembl Gene ID:
ENSAPLG00000011809
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012348
18740956 - 18748080
7125