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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1879685_1906257_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1879685 - 1906257
Intron Length:
26573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CTCTCCCTAATC
Flanking Amino Acid:
LNDAVAIVLTYSISIYSPKE
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
63.3
0.4
1.7
70.63
41.3

Associated Gene:

Gene:
SLC9A9
Ensembl Gene ID:
ENSAPLG00000000606
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001069
1821682 - 2036835
215154