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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18805430_18806147_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18805430 - 18806147
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATTT
Flanking Amino Acid:
KACSDTTLAQITTSLDSVGR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.8
82.3
34
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
57.4
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
GNB4
Ensembl Gene ID:
ENSAPLG00000012235
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012755
18758695 - 18810774
52080
ENSAPLT00000039069
18790529 - 18812982
22454