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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18808641_18808848_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18808641 - 18808848
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAT
5'SS Class:
major
3'SS Sequence:
CTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTTCTTAACT
Flanking Amino Acid:
RVSRELPGHTGYLSCCRFLD
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.3
68.8
43.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.7
0.8
0.7
84.6
30.3
Minor 5ss
35
-1.7
3.1
47.7
47.8
Minor BPS
83.5
1.13
1
89.83
34.4

Associated Gene:

Gene:
GNB4
Ensembl Gene ID:
ENSAPLG00000012235
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039069
18790529 - 18812982
22454
ENSAPLT00000012755
18758695 - 18810774
52080