About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18818179_18818983_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18818179 - 18818983
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
GTTTGTTTTACA
Flanking Amino Acid:
ENIQSSSKQLRNKAIHLENE
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
66.6
44.7
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
35
-1.7
2.9
43.7
43.2
Minor BPS
55.3
0.16
2.1
71.79
40.2

Associated Gene:

Gene:
MFN1
Ensembl Gene ID:
ENSAPLG00000012500
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013096
18817635 - 18839346
21712