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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18819119_18820470_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18819119 - 18820470
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
ATTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TAAACTCTGACT
Flanking Amino Acid:
TSANCSHQVQQEMATTFARL
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
84.1
0.77
0.7
82.8
28.4
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
52.3
0.15
1.7
70.56
40

Associated Gene:

Gene:
MFN1
Ensembl Gene ID:
ENSAPLG00000012500
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013096
18817635 - 18839346
21712