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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18823184_18824150_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18823184 - 18824150
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTGAAACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCTTTCTGAAAC
Flanking Amino Acid:
SPQVLKLYKTELNKHIEDGL
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
69.1
0.43
1
63.9
41.5
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
63.6
0.41
1.5
72.17
38.7

Associated Gene:

Gene:
MFN1
Ensembl Gene ID:
ENSAPLG00000012500
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013096
18817635 - 18839346
21712