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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18824256_18824546_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18824256 - 18824546
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAAAA
U12 Branch Point Sequence:
AGTAGGAGAAAC
Flanking Amino Acid:
KRVTEEVENKVSSAMTDEIC
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
47.2
-0.1
1.3
51
41.5
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
32.1
-1.3
2.3
41.91
37.4

Associated Gene:

Gene:
MFN1
Ensembl Gene ID:
ENSAPLG00000012500
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013096
18817635 - 18839346
21712