About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18844357_18845161_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18844357 - 18845161
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAATTTG
5'SS Class:
major
3'SS Sequence:
GCTAACTGAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAGCT
Flanking Amino Acid:
NRGKSFNTGQIKYGPRFFAG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
65.8
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
48.2
-0.1
1.2
45.1
40.2
Minor 5ss
44.4
-0.6
2.9
54.2
44.2
Minor BPS
61.9
0.45
1.8
82.35
38.5

Associated Gene:

Gene:
ZNF639
Ensembl Gene ID:
ENSAPLG00000012914
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013442
18843140 - 18846314
3175