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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18857550_18858236_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18857550 - 18858236
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAC
U12 Branch Point Sequence:
TCTTCCCCATCT
Flanking Amino Acid:
QECTKTREFERFQEMCYKAY
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
60.3
0.26
1.1
68.9
36.5
Major PPT
80.6
0.69
0.8
72.3
37.5
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
50.2
0.09
2.1
77.09
45

Associated Gene:

Gene:
PIK3CA
Ensembl Gene ID:
ENSAPLG00000012924
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013522
18857279 - 18878583
21305
ENSAPLT00000013502
18855424 - 18883704
28281