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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18861243_18861580_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18861243 - 18861580
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATAA
5'SS Class:
major
3'SS Sequence:
GATTATTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGTTCTCAAAA
Flanking Amino Acid:
KQEKKDETQKVQMKFLVEQM
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
68.5
32
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.9
0.52
1
70.9
43.7
Minor 5ss
43.4
-0.7
2.8
56
48.1
Minor BPS
56.1
0.19
1.7
65.52
40.6

Associated Gene:

Gene:
PIK3CA
Ensembl Gene ID:
ENSAPLG00000012924
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013522
18857279 - 18878583
21305
ENSAPLT00000013502
18855424 - 18883704
28281