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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18878646_18882868_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18878646 - 18882868
Intron Length:
4223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATGCTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
63.9
0.51
1.9
79.77
41.5

Associated Gene:

Gene:
PIK3CA
Ensembl Gene ID:
ENSAPLG00000012924
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013502
18855424 - 18883704
28281