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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18898638_18899741_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18898638 - 18899741
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
CAGTGATTAATT
Flanking Amino Acid:
SAQQAQAHYQGKNHSKKLRN
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
85.4
0.8
0.8
77
37.2
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
49.2
0.02
2
65.88
45

Associated Gene:

Gene:
ZMAT3
Ensembl Gene ID:
ENSAPLG00000013292
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013836
18898312 - 18905972
7661
ENSAPLT00000021193
18896145 - 18903827
7683