Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18901578_18901689_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18901578 - 18901689

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAGGTATT

5'SS Class:

major

3'SS Sequence:

GTTTAATCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ATTTGTTTAATC

Flanking Amino Acid:

RLAEAQNNSFSDASELGKRR

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.4

0.36

1.3

74.5

41.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

0.61

0.9

43.8

Minor 5ss

41.8

-0.9

3.2

39.1

Minor BPS

67.2

0.52

1.7

76.18

34.5

Associated Gene:

Gene:

ZMAT3

Ensembl Gene ID:

ENSAPLG00000013292

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013836

18898312 - 18905972

7661

ENSAPLT00000021193

18896145 - 18903827

7683