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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18946634_18947132_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18946634 - 18947132
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
TCTCTGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATTTCTCTGATT
Flanking Amino Acid:
NEETMKINSETLKQKHISQK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
79
0.72
1
69
38.9
Major PPT
78.7
0.65
0.9
69.6
40.4
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
63.3
0.5
1.6
81.83
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020595
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043757
18945849 - 19025132
79284