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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18947329_18949698_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18947329 - 18949698
Intron Length:
2370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTGCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CATGCTCTAACA
Flanking Amino Acid:
GITLLRSYMQSVWTEEAQCS
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
73.9
0.54
0.9
73.6
37
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
53.8
0.12
1.8
64.81
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020595
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029660
18941765 - 19025132
83368
ENSAPLT00000024141
18941765 - 19067848
126084
ENSAPLT00000013986
18942765 - 18980760
37996
ENSAPLT00000043757
18945849 - 19025132
79284
ENSAPLT00000034863
18942765 - 19067788
125024